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Isolation, identification and characterization of Jute Genomic LTR retrotransposon sequences

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dc.contributor.advisor Choudhury, Dr. Naiyyum, Khan, Dr. Haseena
dc.contributor.author Siddiqi, Sadaf Saaz
dc.date.accessioned 2012-03-04T09:43:08Z
dc.date.available 2012-03-04T09:43:08Z
dc.date.copyright 2012
dc.date.issued 2012-01
dc.identifier.other ID 07076003
dc.identifier.other ID 07176003
dc.identifier.uri http://hdl.handle.net/10361/1643
dc.description This thesis is submitted in a partial fulfillment of the requirements for the degree of Masters of Science in Biotechnology, 2012 en_US
dc.description Cataloged from PDF version of thesis report.
dc.description Includes bibliographical references (page 63-72).
dc.description.abstract Long Terminal Repeat (LTR) retrotransposons make up a significant part of eukaryotic genomes and play an important role in plant genome evolution. Jute is an important fiber crop, and the Jute genome, consisting of 1,250 Mbps, is largely unexplored. In this study an attempt was made to identify and characterize the LTR retrotransposons of the Jute genome Chorchoru solitorius in order to understand the genome better. The Reverse Trancriptase domain of Ty l -copia and Ty3-gypsy LTR retrotransposons of Jute were amplified by degenerate primers. The sequences were analyzed and clustered into groups. Reverse transcriptase PCR was used to analyze any transcriptional activity. Sequence analysis showed a higher heterogeneity among Tyl-copia retrotransposons than Ty3-gypsy retrotransposons. One of the groups of retrotransposon Tyl-copia was found to be transcriptionally active. As the LTR retrotransposons constitute a large portion of the Jute genome, the findings of this study suggest the importance of these elements in Jute genome evolution. en_US
dc.description.statementofresponsibility Sadaf Saaz Siddiqi
dc.format.extent 72 pages
dc.language.iso en en_US
dc.publisher BRAC University en_US
dc.rights BRAC University thesis are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission.
dc.title Isolation, identification and characterization of Jute Genomic LTR retrotransposon sequences en_US
dc.type Thesis en_US
dc.contributor.department Department of Mathematical and Natural Science, BRAC University
dc.description.degree M. Biotechnology


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